SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    3818, 3819, 3820, 3821, 3822, 3823, 3824, 
    3825, 3826, 3827, 3828, 3829, 3830, 
    3831, 3832, 3778, 2103, 2104, 2105, 
    2106, 2107, 2108, 2109, 2110, 2111, 
    2112, 2113, 2114, 2115, 2116, 2117, 
    2118, 2119, 2120, 2121, 2122, 2123, 
    2124, 2125, 2126, 2127, 2128, 2129, 
    3752, 3753, 3754, 3755, 3756, 3757, 
    3758, 3759, 3760, 3761, 3762, 3763, 
    3764, 3765, 3766, 3767, 3768, 3769, 
    3770, 3771, 3772, 3773, 3774, 3775, 
    3776, 3777, 1143, 1139, 1140, 1141, 
    1142, 3681, 3682, 3683, 3684, 3685, 
    4890, 2207, 2208, 2209, 2210, 2211, 
    2212, 2213, 2214, 2215, 2216, 5808, 
    5809, 5810, 5811, 5812, 5813
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00177

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "67.66"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 97,
        "rows_produced_per_join": 19,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (3818,3819,3820,3821,3822,3823,3824,3825,3826,3827,3828,3829,3830,3831,3832,3778,2103,2104,2105,2106,2107,2108,2109,2110,2111,2112,2113,2114,2115,2116,2117,2118,2119,2120,2121,2122,2123,2124,2125,2126,2127,2128,2129,3752,3753,3754,3755,3756,3757,3758,3759,3760,3761,3762,3763,3764,3765,3766,3767,3768,3769,3770,3771,3772,3773,3774,3775,3776,3777,1143,1139,1140,1141,1142,3681,3682,3683,3684,3685,4890,2207,2208,2209,2210,2211,2212,2213,2214,2215,2216,5808,5809,5810,5811,5812,5813))",
        "cost_info": {
          "read_cost": "65.72",
          "eval_cost": "1.94",
          "prefix_cost": "67.66",
          "data_read_per_join": "465"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
1139 0.00000000
1140 0.00000000
1141 0.00000000
1142 0.00000000
1143 0.00000000
2103 0.00000000
2104 0.00000000
2105 0.00000000
2106 0.00000000
2107 0.00000000
2108 0.00000000
2109 0.00000000
2110 0.00000000
2111 0.00000000
2112 0.00000000
2113 0.00000000
2114 0.00000000
2115 0.00000000
2116 0.00000000
2117 0.00000000
2118 0.00000000
2119 0.00000000
2120 0.00000000
2121 0.00000000
2122 0.00000000
2123 0.00000000
2124 0.00000000
2125 0.00000000
2126 0.00000000
2127 0.00000000
2128 0.00000000
2129 0.00000000
2207 0.00000000
2208 0.00000000
2209 0.00000000
2210 0.00000000
2211 0.00000000
2212 0.00000000
2213 0.00000000
2214 0.00000000
2215 0.00000000
2216 0.00000000
3681 0.00000000
3682 0.00000000
3683 0.00000000
3684 0.00000000
3685 0.00000000
3752 0.00000000
3753 0.00000000
3754 0.00000000
3755 0.00000000
3756 0.00000000
3757 0.00000000
3758 0.00000000
3759 0.00000000
3760 0.00000000
3761 0.00000000
3762 0.00000000
3763 0.00000000
3764 0.00000000
3765 0.00000000
3766 0.00000000
3767 0.00000000
3768 0.00000000
3769 0.00000000
3770 0.00000000
3771 0.00000000
3772 0.00000000
3773 0.00000000
3774 0.00000000
3775 0.00000000
3776 0.00000000
3777 0.00000000
3778 0.00000000
3818 0.00000000
3819 0.00000000
3820 0.00000000
3821 0.00000000
3822 0.00000000
3823 0.00000000
3824 0.00000000
3825 0.00000000
3826 0.00000000
3827 0.00000000
3828 0.00000000
3829 0.00000000
3830 0.00000000
3831 0.00000000
3832 0.00000000
4890 0.00000000
5808 0.00000000
5809 0.00000000
5810 0.00000000
5811 0.00000000
5812 0.00000000
5813 0.00000000