SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    11851, 11869, 11887, 11909, 11929, 11936, 
    11940, 11944, 11951, 11958, 11959, 
    11960, 11961, 11962, 11963, 11964, 
    11965, 12030, 12031, 12032, 12033, 
    12034, 12035, 12036
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00068

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "20.86"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 33,
        "rows_produced_per_join": 6,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (11851,11869,11887,11909,11929,11936,11940,11944,11951,11958,11959,11960,11961,11962,11963,11964,11965,12030,12031,12032,12033,12034,12035,12036))",
        "cost_info": {
          "read_cost": "20.20",
          "eval_cost": "0.66",
          "prefix_cost": "20.86",
          "data_read_per_join": "158"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
11851 0.00000000
11869 0.00000000
11887 0.00000000
11909 0.00000000
11929 0.00000000
11936 0.00000000
11940 0.00000000
11944 0.00000000
11951 0.00000000
11958 0.00000000
11959 0.00000000
11960 0.00000000
11961 0.00000000
11962 0.00000000
11963 0.00000000
11964 0.00000000
11965 0.00000000
12030 0.00000000
12031 0.00000000
12032 0.00000000
12033 0.00000000
12034 0.00000000
12035 0.00000000
12036 0.00000000