SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    4115, 4116, 4149, 4150, 4151, 4152, 4153, 
    4154, 4155, 4202, 4203, 4204, 4205, 
    4206, 4207, 4208, 3109, 3123, 6671, 
    6676, 6684, 5, 6, 7, 8, 9, 10, 11, 57, 58, 
    59, 60, 61, 62, 63, 111, 112, 113, 114, 
    115, 116, 117, 210, 211, 212, 213, 214, 
    215
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00123

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "34.06"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 49,
        "rows_produced_per_join": 9,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (4115,4116,4149,4150,4151,4152,4153,4154,4155,4202,4203,4204,4205,4206,4207,4208,3109,3123,6671,6676,6684,5,6,7,8,9,10,11,57,58,59,60,61,62,63,111,112,113,114,115,116,117,210,211,212,213,214,215))",
        "cost_info": {
          "read_cost": "33.08",
          "eval_cost": "0.98",
          "prefix_cost": "34.06",
          "data_read_per_join": "235"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
5 0.00000000
6 0.00000000
7 0.00000000
8 0.00000000
9 0.00000000
10 0.00000000
11 0.00000000
57 0.00000000
58 0.00000000
59 0.00000000
60 0.00000000
61 0.00000000
62 0.00000000
63 0.00000000
111 0.00000000
112 0.00000000
113 0.00000000
114 0.00000000
115 0.00000000
116 0.00000000
117 0.00000000
210 0.00000000
211 0.00000000
212 0.00000000
213 0.00000000
214 0.00000000
215 0.00000000
3109 272.00000000
3123 272.00000000
4115 0.00000000
4116 0.00000000
4149 0.00000000
4150 0.00000000
4151 0.00000000
4152 0.00000000
4153 0.00000000
4154 0.00000000
4155 0.00000000
4202 0.00000000
4203 0.00000000
4204 0.00000000
4205 0.00000000
4206 0.00000000
4207 0.00000000
4208 0.00000000
6671 272.00000000
6676 272.00000000
6684 272.00000000