SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    5927, 5928, 5929, 5930, 5994, 5995, 5996, 
    5997, 5998, 5999, 6000, 6001, 6002, 
    6105, 6106, 6107, 6108, 1653, 2224, 
    1599, 1572, 2603, 6191, 2509
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00086

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "16.81"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 24,
        "rows_produced_per_join": 4,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (5927,5928,5929,5930,5994,5995,5996,5997,5998,5999,6000,6001,6002,6105,6106,6107,6108,1653,2224,1599,1572,2603,6191,2509))",
        "cost_info": {
          "read_cost": "16.33",
          "eval_cost": "0.48",
          "prefix_cost": "16.81",
          "data_read_per_join": "115"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
1572 0.00000000
1599 0.00000000
1653 0.00000000
2224 0.00000000
2509 0.00000000
2603 0.00000000
5927 0.00000000
5928 0.00000000
5929 0.00000000
5930 0.00000000
5994 0.00000000
5995 0.00000000
5996 0.00000000
5997 0.00000000
5998 0.00000000
5999 0.00000000
6000 0.00000000
6001 0.00000000
6002 0.00000000
6105 0.00000000
6106 0.00000000
6107 0.00000000
6108 0.00000000
6191 0.00000000