SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    6719, 3146, 3150, 1345, 1346, 1347, 1348, 
    1349, 1350, 1351, 1352, 1353, 1354, 
    3698, 3699, 3700, 3701, 3702, 3703, 
    3704, 3705, 3706, 3707, 6723
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00064

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "16.81"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 24,
        "rows_produced_per_join": 4,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (6719,3146,3150,1345,1346,1347,1348,1349,1350,1351,1352,1353,1354,3698,3699,3700,3701,3702,3703,3704,3705,3706,3707,6723))",
        "cost_info": {
          "read_cost": "16.33",
          "eval_cost": "0.48",
          "prefix_cost": "16.81",
          "data_read_per_join": "115"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
1345 0.00000000
1346 0.00000000
1347 0.00000000
1348 0.00000000
1349 0.00000000
1350 0.00000000
1351 0.00000000
1352 0.00000000
1353 0.00000000
1354 0.00000000
3146 2230.00000000
3150 2090.00000000
3698 0.00000000
3699 0.00000000
3700 0.00000000
3701 0.00000000
3702 0.00000000
3703 0.00000000
3704 0.00000000
3705 0.00000000
3706 0.00000000
3707 0.00000000
6719 1960.00000000
6723 2060.00000000