SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    1858, 1859, 1860, 1861, 1862, 1863, 1864, 
    1865, 1866, 1867, 1868, 1869, 1870, 
    1871, 1872, 1874, 1875, 1876, 1877, 
    3748, 3749, 3750, 3751, 5505, 5506, 
    5507, 5508, 5509, 5510, 5511, 5512, 
    5513, 5514, 5515, 5516, 5517, 5518, 
    5519, 5520, 5521, 5522, 5523, 5524, 
    5525, 5526, 5527, 5528, 5529, 5530, 
    5531, 5532, 5533, 5534, 5535, 5536, 
    5537, 5538, 5539, 5540, 5541, 5542, 
    5543, 5544, 5545, 5546, 5547, 5548, 
    5549, 5550, 5551, 5552, 5553, 5554, 
    5555, 5556, 5557, 5558, 5559, 1457, 
    5166, 1447, 5156, 5169, 3162, 1450, 
    5159, 1440, 5149, 1451, 5160, 1441, 
    5150, 1453, 5162, 1443, 5152
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00160

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "67.66"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 97,
        "rows_produced_per_join": 19,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (1858,1859,1860,1861,1862,1863,1864,1865,1866,1867,1868,1869,1870,1871,1872,1874,1875,1876,1877,3748,3749,3750,3751,5505,5506,5507,5508,5509,5510,5511,5512,5513,5514,5515,5516,5517,5518,5519,5520,5521,5522,5523,5524,5525,5526,5527,5528,5529,5530,5531,5532,5533,5534,5535,5536,5537,5538,5539,5540,5541,5542,5543,5544,5545,5546,5547,5548,5549,5550,5551,5552,5553,5554,5555,5556,5557,5558,5559,1457,5166,1447,5156,5169,3162,1450,5159,1440,5149,1451,5160,1441,5150,1453,5162,1443,5152))",
        "cost_info": {
          "read_cost": "65.72",
          "eval_cost": "1.94",
          "prefix_cost": "67.66",
          "data_read_per_join": "465"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
1440 0.00000000
1441 0.00000000
1443 0.00000000
1447 0.00000000
1450 0.00000000
1451 0.00000000
1453 0.00000000
1457 0.00000000
1858 0.00000000
1859 0.00000000
1860 0.00000000
1861 0.00000000
1862 0.00000000
1863 0.00000000
1864 0.00000000
1865 0.00000000
1866 0.00000000
1867 0.00000000
1868 0.00000000
1869 0.00000000
1870 0.00000000
1871 0.00000000
1872 0.00000000
1874 0.00000000
1875 0.00000000
1876 0.00000000
1877 0.00000000
3162 797.00000000
3748 0.00000000
3749 0.00000000
3750 0.00000000
3751 0.00000000
5149 0.00000000
5150 0.00000000
5152 0.00000000
5156 0.00000000
5159 0.00000000
5160 0.00000000
5162 0.00000000
5166 0.00000000
5169 0.00000000
5505 0.00000000
5506 0.00000000
5507 0.00000000
5508 0.00000000
5509 0.00000000
5510 0.00000000
5511 0.00000000
5512 0.00000000
5513 0.00000000
5514 0.00000000
5515 0.00000000
5516 0.00000000
5517 0.00000000
5518 0.00000000
5519 0.00000000
5520 0.00000000
5521 0.00000000
5522 0.00000000
5523 0.00000000
5524 0.00000000
5525 0.00000000
5526 0.00000000
5527 0.00000000
5528 0.00000000
5529 0.00000000
5530 0.00000000
5531 0.00000000
5532 0.00000000
5533 0.00000000
5534 0.00000000
5535 0.00000000
5536 0.00000000
5537 0.00000000
5538 0.00000000
5539 0.00000000
5540 0.00000000
5541 0.00000000
5542 0.00000000
5543 0.00000000
5544 0.00000000
5545 0.00000000
5546 0.00000000
5547 0.00000000
5548 0.00000000
5549 0.00000000
5550 0.00000000
5551 0.00000000
5552 0.00000000
5553 0.00000000
5554 0.00000000
5555 0.00000000
5556 0.00000000
5557 0.00000000
5558 0.00000000
5559 0.00000000