SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    4110, 4111, 4112, 4113, 4114, 4115, 4116, 
    4149, 4150, 4151, 4152, 4153, 4154, 
    4155, 4202, 4203, 4204, 4205, 4206, 
    4207, 4208, 3109, 3123, 6671
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00075

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "16.81"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 24,
        "rows_produced_per_join": 4,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (4110,4111,4112,4113,4114,4115,4116,4149,4150,4151,4152,4153,4154,4155,4202,4203,4204,4205,4206,4207,4208,3109,3123,6671))",
        "cost_info": {
          "read_cost": "16.33",
          "eval_cost": "0.48",
          "prefix_cost": "16.81",
          "data_read_per_join": "115"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
3109 272.00000000
3123 272.00000000
4110 0.00000000
4111 0.00000000
4112 0.00000000
4113 0.00000000
4114 0.00000000
4115 0.00000000
4116 0.00000000
4149 0.00000000
4150 0.00000000
4151 0.00000000
4152 0.00000000
4153 0.00000000
4154 0.00000000
4155 0.00000000
4202 0.00000000
4203 0.00000000
4204 0.00000000
4205 0.00000000
4206 0.00000000
4207 0.00000000
4208 0.00000000
6671 272.00000000