SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    2165, 2166, 2167, 2168, 2169, 2170, 2171, 
    2172, 2173, 2174, 2175, 2176, 2177, 
    2178, 2179, 2180, 2181, 2182, 2183, 
    2184, 3779, 3780, 3781, 3782, 3783, 
    3784, 3785, 3786, 3787, 3788, 3789, 
    3790, 3791, 3792, 3793, 3794, 3795, 
    3796, 3797, 3798, 3799, 3800, 3801, 
    3802, 3803, 3804, 3805, 3806, 3807, 
    3808, 3809, 3810, 3811, 3812, 3813, 
    3814, 3815, 3816, 3817, 3818, 3819, 
    3820, 3821, 3822, 3823, 3824, 3825, 
    3826, 3827, 3828, 3829, 3830, 3831, 
    3832, 3778, 2103, 2104, 2105, 2106, 
    2107, 2108, 2109, 2110, 2111, 2112, 
    2113, 2114, 2115, 2116, 2117, 2118, 
    2119, 2120, 2121, 2122, 2123
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00159

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "67.21"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 96,
        "rows_produced_per_join": 19,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (2165,2166,2167,2168,2169,2170,2171,2172,2173,2174,2175,2176,2177,2178,2179,2180,2181,2182,2183,2184,3779,3780,3781,3782,3783,3784,3785,3786,3787,3788,3789,3790,3791,3792,3793,3794,3795,3796,3797,3798,3799,3800,3801,3802,3803,3804,3805,3806,3807,3808,3809,3810,3811,3812,3813,3814,3815,3816,3817,3818,3819,3820,3821,3822,3823,3824,3825,3826,3827,3828,3829,3830,3831,3832,3778,2103,2104,2105,2106,2107,2108,2109,2110,2111,2112,2113,2114,2115,2116,2117,2118,2119,2120,2121,2122,2123))",
        "cost_info": {
          "read_cost": "65.29",
          "eval_cost": "1.92",
          "prefix_cost": "67.21",
          "data_read_per_join": "460"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
2103 0.00000000
2104 0.00000000
2105 0.00000000
2106 0.00000000
2107 0.00000000
2108 0.00000000
2109 0.00000000
2110 0.00000000
2111 0.00000000
2112 0.00000000
2113 0.00000000
2114 0.00000000
2115 0.00000000
2116 0.00000000
2117 0.00000000
2118 0.00000000
2119 0.00000000
2120 0.00000000
2121 0.00000000
2122 0.00000000
2123 0.00000000
2165 0.00000000
2166 0.00000000
2167 0.00000000
2168 0.00000000
2169 0.00000000
2170 0.00000000
2171 0.00000000
2172 0.00000000
2173 0.00000000
2174 0.00000000
2175 0.00000000
2176 0.00000000
2177 0.00000000
2178 0.00000000
2179 0.00000000
2180 0.00000000
2181 0.00000000
2182 0.00000000
2183 0.00000000
2184 0.00000000
3778 0.00000000
3779 0.00000000
3780 0.00000000
3781 0.00000000
3782 0.00000000
3783 0.00000000
3784 0.00000000
3785 0.00000000
3786 0.00000000
3787 0.00000000
3788 0.00000000
3789 0.00000000
3790 0.00000000
3791 0.00000000
3792 0.00000000
3793 0.00000000
3794 0.00000000
3795 0.00000000
3796 0.00000000
3797 0.00000000
3798 0.00000000
3799 0.00000000
3800 0.00000000
3801 0.00000000
3802 0.00000000
3803 0.00000000
3804 0.00000000
3805 0.00000000
3806 0.00000000
3807 0.00000000
3808 0.00000000
3809 0.00000000
3810 0.00000000
3811 0.00000000
3812 0.00000000
3813 0.00000000
3814 0.00000000
3815 0.00000000
3816 0.00000000
3817 0.00000000
3818 0.00000000
3819 0.00000000
3820 0.00000000
3821 0.00000000
3822 0.00000000
3823 0.00000000
3824 0.00000000
3825 0.00000000
3826 0.00000000
3827 0.00000000
3828 0.00000000
3829 0.00000000
3830 0.00000000
3831 0.00000000
3832 0.00000000