SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    6036, 6037, 6038, 6111, 6112, 6113, 6114, 
    6115, 6116, 6117, 6118, 6119, 6201, 
    6202, 6203, 6204, 6205, 6206, 6207, 
    6208, 3033, 3034, 3035, 3036
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00067

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "16.81"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 24,
        "rows_produced_per_join": 4,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (6036,6037,6038,6111,6112,6113,6114,6115,6116,6117,6118,6119,6201,6202,6203,6204,6205,6206,6207,6208,3033,3034,3035,3036))",
        "cost_info": {
          "read_cost": "16.33",
          "eval_cost": "0.48",
          "prefix_cost": "16.81",
          "data_read_per_join": "115"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
3033 0.00000000
3034 0.00000000
3035 0.00000000
3036 0.00000000
6036 0.00000000
6037 0.00000000
6038 0.00000000
6111 0.00000000
6112 0.00000000
6113 0.00000000
6114 0.00000000
6115 0.00000000
6116 0.00000000
6117 0.00000000
6118 0.00000000
6119 0.00000000
6201 0.00000000
6202 0.00000000
6203 0.00000000
6204 0.00000000
6205 0.00000000
6206 0.00000000
6207 0.00000000
6208 0.00000000