SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    5740, 5741, 5742, 5743, 5744, 5745, 5746, 
    5747, 5748, 5749, 5750, 5751, 5752, 
    5753, 5754, 5755, 5756, 5757, 5758, 
    5759, 5760, 5761, 5762, 5763
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00075

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "17.26"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 25,
        "rows_produced_per_join": 4,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (5740,5741,5742,5743,5744,5745,5746,5747,5748,5749,5750,5751,5752,5753,5754,5755,5756,5757,5758,5759,5760,5761,5762,5763))",
        "cost_info": {
          "read_cost": "16.76",
          "eval_cost": "0.50",
          "prefix_cost": "17.26",
          "data_read_per_join": "119"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
5740 0.00000000
5741 0.00000000
5742 0.00000000
5743 0.00000000
5744 0.00000000
5745 0.00000000
5746 0.00000000
5747 0.00000000
5748 0.00000000
5749 0.00000000
5750 0.00000000
5751 0.00000000
5752 0.00000000
5753 0.00000000
5754 0.00000000
5755 0.00000000
5756 0.00000000
5757 0.00000000
5758 0.00000000
5759 0.00000000
5760 0.00000000
5761 0.00000000
5762 0.00000000
5763 0.00000000