SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    5773, 5774, 5775, 5776, 5777, 5778, 5779, 
    5780, 5781, 5782, 5783, 5784, 1986, 
    1987, 1988, 1989, 1990, 1991, 1992, 
    1993, 1994, 1995, 1996, 1997, 1998, 
    1999, 2000, 2001, 2002, 2003, 2004, 
    2005, 2006, 2007, 2008, 2009, 2010, 
    2011, 2012, 2013, 2014, 2015, 2016, 
    2017, 2018, 2019, 2020, 2021
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00096

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "34.06"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 49,
        "rows_produced_per_join": 9,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (5773,5774,5775,5776,5777,5778,5779,5780,5781,5782,5783,5784,1986,1987,1988,1989,1990,1991,1992,1993,1994,1995,1996,1997,1998,1999,2000,2001,2002,2003,2004,2005,2006,2007,2008,2009,2010,2011,2012,2013,2014,2015,2016,2017,2018,2019,2020,2021))",
        "cost_info": {
          "read_cost": "33.08",
          "eval_cost": "0.98",
          "prefix_cost": "34.06",
          "data_read_per_join": "235"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
1986 0.00000000
1987 0.00000000
1988 0.00000000
1989 0.00000000
1990 0.00000000
1991 0.00000000
1992 0.00000000
1993 0.00000000
1994 0.00000000
1995 0.00000000
1996 0.00000000
1997 0.00000000
1998 0.00000000
1999 0.00000000
2000 0.00000000
2001 0.00000000
2002 0.00000000
2003 0.00000000
2004 0.00000000
2005 0.00000000
2006 0.00000000
2007 0.00000000
2008 0.00000000
2009 0.00000000
2010 0.00000000
2011 0.00000000
2012 0.00000000
2013 0.00000000
2014 0.00000000
2015 0.00000000
2016 0.00000000
2017 0.00000000
2018 0.00000000
2019 0.00000000
2020 0.00000000
2021 0.00000000
5773 0.00000000
5774 0.00000000
5775 0.00000000
5776 0.00000000
5777 0.00000000
5778 0.00000000
5779 0.00000000
5780 0.00000000
5781 0.00000000
5782 0.00000000
5783 0.00000000
5784 0.00000000