SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    2022, 2023, 2024, 2025, 2026, 2027, 2028, 
    2029, 2030, 2031, 2032, 2033, 2034, 
    2035, 2036, 2037, 2038, 5668, 5669, 
    5670, 5671, 5672, 5673, 5674, 5675, 
    5676, 5677, 5678, 5679, 5680, 5681, 
    5682, 5683, 5684, 5685, 5686, 5687, 
    5688, 5689, 5690, 5691, 5692, 5693, 
    5694, 5695, 5696, 5697, 5698
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00108

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "33.61"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 48,
        "rows_produced_per_join": 9,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (2022,2023,2024,2025,2026,2027,2028,2029,2030,2031,2032,2033,2034,2035,2036,2037,2038,5668,5669,5670,5671,5672,5673,5674,5675,5676,5677,5678,5679,5680,5681,5682,5683,5684,5685,5686,5687,5688,5689,5690,5691,5692,5693,5694,5695,5696,5697,5698))",
        "cost_info": {
          "read_cost": "32.65",
          "eval_cost": "0.96",
          "prefix_cost": "33.61",
          "data_read_per_join": "230"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
2022 0.00000000
2023 0.00000000
2024 0.00000000
2025 0.00000000
2026 0.00000000
2027 0.00000000
2028 0.00000000
2029 0.00000000
2030 0.00000000
2031 0.00000000
2032 0.00000000
2033 0.00000000
2034 0.00000000
2035 0.00000000
2036 0.00000000
2037 0.00000000
2038 0.00000000
5668 0.00000000
5669 0.00000000
5670 0.00000000
5671 0.00000000
5672 0.00000000
5673 0.00000000
5674 0.00000000
5675 0.00000000
5676 0.00000000
5677 0.00000000
5678 0.00000000
5679 0.00000000
5680 0.00000000
5681 0.00000000
5682 0.00000000
5683 0.00000000
5684 0.00000000
5685 0.00000000
5686 0.00000000
5687 0.00000000
5688 0.00000000
5689 0.00000000
5690 0.00000000
5691 0.00000000
5692 0.00000000
5693 0.00000000
5694 0.00000000
5695 0.00000000
5696 0.00000000
5697 0.00000000
5698 0.00000000