SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    6106, 6107, 6108, 1653, 2224, 1599, 1572, 
    2603, 6191, 2509, 1626, 2281, 2282, 
    2283, 2284, 2285, 2331, 2332, 2333, 
    2334, 2335, 2403, 2404, 2405
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00079

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "16.81"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 24,
        "rows_produced_per_join": 4,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (6106,6107,6108,1653,2224,1599,1572,2603,6191,2509,1626,2281,2282,2283,2284,2285,2331,2332,2333,2334,2335,2403,2404,2405))",
        "cost_info": {
          "read_cost": "16.33",
          "eval_cost": "0.48",
          "prefix_cost": "16.81",
          "data_read_per_join": "115"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
1572 0.00000000
1599 0.00000000
1626 0.00000000
1653 0.00000000
2224 0.00000000
2281 0.00000000
2282 0.00000000
2283 0.00000000
2284 0.00000000
2285 0.00000000
2331 0.00000000
2332 0.00000000
2333 0.00000000
2334 0.00000000
2335 0.00000000
2403 0.00000000
2404 0.00000000
2405 0.00000000
2509 0.00000000
2603 0.00000000
6106 0.00000000
6107 0.00000000
6108 0.00000000
6191 0.00000000