SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    2186, 2187, 2188, 5785, 5786, 5787, 5788, 
    5789, 6623, 1504, 1494, 6209, 1499, 
    1489, 1433, 6614, 2268, 2269, 2270, 
    2271, 2336, 2337, 2338, 2339
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00069

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "16.81"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 24,
        "rows_produced_per_join": 4,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (2186,2187,2188,5785,5786,5787,5788,5789,6623,1504,1494,6209,1499,1489,1433,6614,2268,2269,2270,2271,2336,2337,2338,2339))",
        "cost_info": {
          "read_cost": "16.33",
          "eval_cost": "0.48",
          "prefix_cost": "16.81",
          "data_read_per_join": "115"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
1433 0.00000000
1489 0.00000000
1494 0.00000000
1499 0.00000000
1504 0.00000000
2186 0.00000000
2187 0.00000000
2188 0.00000000
2268 0.00000000
2269 0.00000000
2270 0.00000000
2271 0.00000000
2336 0.00000000
2337 0.00000000
2338 0.00000000
2339 0.00000000
5785 0.00000000
5786 0.00000000
5787 0.00000000
5788 0.00000000
5789 0.00000000
6209 0.00000000
6614 0.00000000
6623 0.00000000