SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    11259, 11260, 11261, 11262, 11263, 11264, 
    11265, 11266, 11267, 11268, 11269, 
    11270, 11271, 11272, 11273, 11274, 
    11275, 11276, 11277, 11278
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00056

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "14.01"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 20,
        "rows_produced_per_join": 3,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (11259,11260,11261,11262,11263,11264,11265,11266,11267,11268,11269,11270,11271,11272,11273,11274,11275,11276,11277,11278))",
        "cost_info": {
          "read_cost": "13.61",
          "eval_cost": "0.40",
          "prefix_cost": "14.01",
          "data_read_per_join": "95"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
11259 0.00000000
11260 0.00000000
11261 0.00000000
11262 0.00000000
11263 0.00000000
11264 0.00000000
11265 0.00000000
11266 0.00000000
11267 0.00000000
11268 0.00000000
11269 0.00000000
11270 0.00000000
11271 0.00000000
11272 0.00000000
11273 0.00000000
11274 0.00000000
11275 0.00000000
11276 0.00000000
11277 0.00000000
11278 0.00000000