SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    2942, 2943, 2944, 2945, 2946, 2947, 2948, 
    2949, 2950, 3037, 3038, 3039, 3040, 
    3041, 3042, 3043, 3044, 3045, 3853, 
    5790, 5791, 5792, 5793, 5794
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00058

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "16.81"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 24,
        "rows_produced_per_join": 4,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (2942,2943,2944,2945,2946,2947,2948,2949,2950,3037,3038,3039,3040,3041,3042,3043,3044,3045,3853,5790,5791,5792,5793,5794))",
        "cost_info": {
          "read_cost": "16.33",
          "eval_cost": "0.48",
          "prefix_cost": "16.81",
          "data_read_per_join": "115"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
2942 0.00000000
2943 0.00000000
2944 0.00000000
2945 0.00000000
2946 0.00000000
2947 0.00000000
2948 0.00000000
2949 0.00000000
2950 0.00000000
3037 0.00000000
3038 0.00000000
3039 0.00000000
3040 0.00000000
3041 0.00000000
3042 0.00000000
3043 0.00000000
3044 0.00000000
3045 0.00000000
3853 0.00000000
5790 0.00000000
5791 0.00000000
5792 0.00000000
5793 0.00000000
5794 0.00000000