SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    2526, 2527, 2608, 2609, 2610, 2611, 2612, 
    2613, 2614, 2615, 2616, 5872, 5873, 
    5874, 5875, 5940, 5941, 5942, 5943, 
    5944, 5945, 5946, 5947, 5948
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00072

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "16.81"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 24,
        "rows_produced_per_join": 4,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (2526,2527,2608,2609,2610,2611,2612,2613,2614,2615,2616,5872,5873,5874,5875,5940,5941,5942,5943,5944,5945,5946,5947,5948))",
        "cost_info": {
          "read_cost": "16.33",
          "eval_cost": "0.48",
          "prefix_cost": "16.81",
          "data_read_per_join": "115"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
2526 0.00000000
2527 0.00000000
2608 0.00000000
2609 0.00000000
2610 0.00000000
2611 0.00000000
2612 0.00000000
2613 0.00000000
2614 0.00000000
2615 0.00000000
2616 0.00000000
5872 0.00000000
5873 0.00000000
5874 0.00000000
5875 0.00000000
5940 0.00000000
5941 0.00000000
5942 0.00000000
5943 0.00000000
5944 0.00000000
5945 0.00000000
5946 0.00000000
5947 0.00000000
5948 0.00000000