SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    3770, 3771, 3772, 3773, 3774, 3775, 3776, 
    3777, 1143, 1139, 1140, 1141, 1142, 
    3681, 3682, 3683, 3684, 3685, 4890, 
    2207, 2208, 2209, 2210, 2211
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00092

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "16.81"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 24,
        "rows_produced_per_join": 4,
        "filtered": "20.00",
        "index_condition": "(`gaseus`.`cscart_product_prices`.`product_id` in (3770,3771,3772,3773,3774,3775,3776,3777,1143,1139,1140,1141,1142,3681,3682,3683,3684,3685,4890,2207,2208,2209,2210,2211))",
        "cost_info": {
          "read_cost": "16.33",
          "eval_cost": "0.48",
          "prefix_cost": "16.81",
          "data_read_per_join": "115"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`gaseus`.`cscart_product_prices`.`lower_limit` = 1) and (`gaseus`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
1139 0.00000000
1140 0.00000000
1141 0.00000000
1142 0.00000000
1143 0.00000000
2207 0.00000000
2208 0.00000000
2209 0.00000000
2210 0.00000000
2211 0.00000000
3681 0.00000000
3682 0.00000000
3683 0.00000000
3684 0.00000000
3685 0.00000000
3770 0.00000000
3771 0.00000000
3772 0.00000000
3773 0.00000000
3774 0.00000000
3775 0.00000000
3776 0.00000000
3777 0.00000000
4890 0.00000000